The PDB is a key resource in areas of structural biology, such as structural genomics. Most major scientific journals, and some funding agencies, such as the NIH in the USA, now require scientists to submit their structure data to the PDB. If the contents of the PDB are thought of as primary data, then there are hundreds of derived (i.e., secondary) databases that categorize the data differently. For example, both SCOP and CATH categorize structures according to type of structure and assumed evolutionary relations; GO categorize structures based on genes.
image of ftsh peptidase |
Gene Ontology
Molecular function | GTP binding |
Biological process | SRP-dependent cotranslational protein targeting to membrane |
EC#: 3.6.5.4
Authors:
Estrozi, L.F., Boehringer, D., Shan, S.-O., Ban, N., Schaffitzel, C.
Experiment: ELECTRON MICROSCOPY
Chains:AExperiment: ELECTRON MICROSCOPY
image of thermolysin |
Gene Ontology
Molecular function | metalloendopeptidase activity |
EC#: 3.4.24.27
Authors: Juers, D.H., Weik, M.
Experiment: X-RAY DIFFRACTION with resolution of 2.20 Å
Chains:E
image of leucyl aminopeptidase |
Gene Ontology
Cellular component | intracellular |
Molecular function | aminopeptidase activity |
Biological process | proteolysis |
EC# : 3.4.11.1
Authors: Natarajan, S., Huynh, K.-H., Kang, L.W.
Experiment:X-RAY DIFFRACTION with resolution of 2.60 Å
Chains:A, B
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